useDynLib(Biostrings)

exportClasses(AminoAcidAlphabet, BioAlphabet, BioPatternAlphabet, 
	BioString, LongestCommonPrefix, NucleotideAlphabet, simpleBioString,
	book)

exportMethods(allSameLetter, anySameLetter, as.character, as.matrix, 
	"[", "[[", BioStringNewValues, "gapletter<-", initialize, length, 
	matchDNAPattern, nchar, show, substr, substring, needwunsQS)

export(alphabetFrequency, DNAAlphabet, DNAPatternAlphabet, DNAString, 
	DNASuffixArray, LongestCommonPrefix, NucleotideString, 
	reverseComplement, RNAAlphabet, RNAPatternAlphabet, sortDNAString,
	alignScore, StandardPeptideAlphabet, AAString, rpeptide,
	testBiostrings)

S3method(print, needwunsQS)
S3method(alignScore, needwunsQS)
