73880d2708cef05c0b1df5e00d6fe741 *DESCRIPTION
d559687bac698aab39e43655e418b126 *LICENSE
b4bdb7b6209055696300da6cc8b84b86 *NAMESPACE
e11427914a5c7ebc60fa91f7aa9ad75d *NEWS.md
300f3381aebae6e7473f6e4644b0f803 *R/RcppExports.R
eb0b7293eb556a0a3dad2419c43038e4 *R/collapse_singles.R
9cd88a5b879d5937495f45ce7cf8f4ff *R/rncl-package.R
f4fdfce42b2d6a56b6e7d2db0a241179 *R/rncl.R
21f9d0e8c85616c1646c6b8de9a02b7e *README.md
c88f0e72152ce9ff4e5c224d891a9544 *cleanup
90175fc56ee204e4ddd87a05c14ce9cb *inst/newick_bad/Gudrun.nex
1e10833709a3cb968edea67f98e16a33 *inst/newick_bad/bad_newick.tre
5509435f4eb233c88f42eba7a83b7432 *inst/newick_good/Gudrun.tre
14c2582eb8c94a8c6944294cad169285 *inst/newick_good/missing_edge_lengths.tre
338d16f4e1a7cecb3a51a15d43b76d13 *inst/newick_good/simpleTree.tre
75a2c6c9a33a401766479ce17db8088f *inst/newick_good/singleton_tree.tre
b3be916f4d742b7a07d688ba88e9ef93 *inst/newick_good/singleton_with_edge_length.tre
52ad70df750c63629facc1cc908bbc35 *inst/newick_good/test_sing.tre
6b51e76cd13bf3a3c3498eb3978289ac *inst/newick_good/tree1.tre
e24e0e19c7186a52d8299eb571fe534f *inst/newick_good/tree2.tre
c05860e96ba5feab12b1269f43a43f1b *inst/nexusfiles/MultiLineTrees.nex
fb2ae9b4cc08ab2d0959508a55c83633 *inst/nexusfiles/badnex.nex
f8225a526530eabfaa8ea117e2a82aae *inst/nexusfiles/co1.nex
a6fdad8b8df8bdca481fa30b57a1b118 *inst/nexusfiles/multiLines.rds
4d5d4d71cf83b54eed9811470482e8d2 *inst/nexusfiles/newick.tre
bc8aba7197b1ced0ab893cf182948370 *inst/nexusfiles/test_empty.nex
5776170098330a838a9fbdaf2b445605 *inst/nexusfiles/test_subset_alltaxa.nex
fa8bb823db33b1a99263c3187b1df83a *inst/nexusfiles/test_subset_taxa.nex
3b5d79f6910b8a89151a6e2bb4065c5b *inst/nexusfiles/test_underscores.nex
963e6a5568b7fae9291232b8abfd496c *inst/nexusfiles/treeWithDiscreteData.nex
4961bb5af89e1cfd63944af5d8ee8408 *inst/nexusfiles/treeWithUnderscoreLabels.nex
05171f6ee59b1e28f3657b1e1926714d *man/read_nexus_phylo.Rd
3d90eb677a009176775afec71b93aaed *man/rncl.Rd
639eebe420450a49d5300e51e9de2d69 *src/GetNCL.cpp
ed0d19722e28a7d316256f2c247be33e *src/Makevars
1e0cc7f2ea27756865f63d6758ca90a8 *src/Makevars.win
3aafed8c2bf4d94b68aa162f9f614ab2 *src/RcppExports.cpp
79ac353546b0dac965f3d6dfe782e262 *src/collapse_singles.cpp
49103dec6f384de673010b7134bfc1d6 *src/ncl/20180727-075226-r-pkg-update-err.log
5934b0ea0038b8fe5ac2768396ff1848 *src/ncl/20180727-075226-r-pkg-update-out.log
87210b76102c11d0a2890f10494bf75c *src/ncl/ncl.h
693c38f98d7c4292b1c02b5903e67ea6 *src/ncl/nxsallocatematrix.h
9cd773a98f2878a26432953457be6cae *src/ncl/nxsassumptionsblock.h
cafb0b77a61c18bd5e3f2dd217b29e8f *src/ncl/nxsblock.h
994ff5c8246edc19238b40a1cf699098 *src/ncl/nxscdiscretematrix.h
23afe1f8a6bbcd794e097f89df75fa2f *src/ncl/nxscharactersblock.h
c0ab932a2f7f4f4ddecbee38a3055362 *src/ncl/nxscxxdiscretematrix.h
2e24d36bd7f07a17e3efa6f305c91e52 *src/ncl/nxsdatablock.h
19ccdb35c77ee583753e2605310acc2e *src/ncl/nxsdefs.h
c9e55d1032b96ed8560abd86ed428c35 *src/ncl/nxsdiscretedatum.h
56c32fd796763fd62c4916839921e344 *src/ncl/nxsdiscretematrix.h
26e3921bf4a40066b12aa108d68a9e58 *src/ncl/nxsdistancedatum.h
2a48381d52c22f16cc019d9dfdff6930 *src/ncl/nxsdistancesblock.h
56d24853775abec4144713be735a06cc *src/ncl/nxsemptyblock.h
e402d049dc9cccfb6f84c17b01b94e60 *src/ncl/nxsexception.h
5e50cff40a6e1f729a599be4361dccb4 *src/ncl/nxsindent.h
eb76426dff57be41085931b98b59481b *src/ncl/nxsmultiformat.h
fca227a74785bd6aab93514268da93d8 *src/ncl/nxspublicblocks.h
5e9599513e347ae6908d4f452d4c1ef4 *src/ncl/nxsreader.h
97525aa3a9a6e3e1b1fcd85b9b8a0e9a *src/ncl/nxssetreader.h
019995016f630d873851b924f8c565f3 *src/ncl/nxsstring.h
fd8d445cfbd99169f5f3c85d0d9a4b58 *src/ncl/nxstaxaassociationblock.h
6ee472750c56819236ad85c07f557758 *src/ncl/nxstaxablock.h
7e5a97a9094a97149b42dd4b1e07a8f0 *src/ncl/nxstoken.h
2125f0c7682c75a72195435f621fff02 *src/ncl/nxstreesblock.h
866f8bb860c59fa296972f29daa0ae0a *src/ncl/nxsunalignedblock.h
4ddc662cda9776eedd67c97264d6cc79 *src/ncl/nxsutilcopy.h
b6d51ea966d1f4cdaf5625a26a3cc6aa *src/nxsassumptionsblock.cpp
26c8ee9e7bc3fb42b2a3e7e6e33f0e53 *src/nxsblock.cpp
e001bba4ea52bcf984642c2b1e514916 *src/nxscharactersblock.cpp
41e7a1aa3ddc7c0c664c2a9be4c15427 *src/nxscxxdiscretematrix.cpp
5a1c18976ba6e0363d9a2cca46a38985 *src/nxsdatablock.cpp
86281e5739d006cd61fafc09b74c3047 *src/nxsdistancedatum.cpp
b6678476d102320b01682682bc0a60bf *src/nxsdistancesblock.cpp
0b450e2dbd68b29cf071273f58092980 *src/nxsemptyblock.cpp
9544e90a66e7898e087de149afb82119 *src/nxsexception.cpp
d936913e3590b8c2f231ec8f6a3760c8 *src/nxsmultiformat.cpp
098926613198fa0dbae83fd951b9c869 *src/nxspublicblocks.cpp
1a1734aadba8e5a4fa36086537a50ecd *src/nxsreader.cpp
39e0dadc5306b7ab5179c3dfa5e81e81 *src/nxssetreader.cpp
1244b1ec75c2663b152a74921ad6969a *src/nxsstring.cpp
d249dd91842ed712244c7d82c9e3960d *src/nxstaxaassociationblock.cpp
e0185442ae32e8cc6c44cf6d3a22ef68 *src/nxstaxablock.cpp
def2787ca05c353460733e4f0784cae4 *src/nxstoken.cpp
117d2d625051bc6ab83c870cab33a1c2 *src/nxstreesblock.cpp
ab4852075e7f4d6a098acf1d8ac99ece *src/nxsunalignedblock.cpp
42171eea2d5d0805bbee44af26f3c41f *src/rncl_init.c
bcc662bde8a058b55f552ed6a29509d8 *tests/test-all.R
01c699dd3359f9899c5fa55b83360779 *tests/testthat/test.badnex.R
f8297020efed223393a0c76b61e4b61b *tests/testthat/test.rncl.R
